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What Is STEM? TEM vs STEM, 4D-STEM & Electron Diffraction Explained

Written by Marketing team | Mar 26, 2026 1:29:14 PM

Discover how Scanning Transmission Electron Microscopy (STEM) reveals morphology, elemental and phase  composition, crystallinity, atomic structure as well as functional physical properties such as strain or electric fields inside materials and semiconductor devices. Learn the principles behind TEM and STEM, how the image contrast is formed, and why advanced 4D STEM and electron diffraction techniques are extending the conventional analytical STEM and transforming material science characterisation.
 

Introduction  

Scanning Transmission Electron Microscopy (STEM) is one of the most powerful analytical techniques available today. It allows scientists to visualize internal structure, map chemical composition, measure strain, determine grain orientation, and even solve unknown crystal structures down to sub-ångström resolution de novo.

In this guide, you will learn: 

  • The difference between SEM, TEM, and STEM  
  • How contrast is formed in TEM and STEM imaging 
  • Why does acceleration voltage matters  
  • How analytical 4D STEM enables chemical and structural mapping
  • How 4D STEM makes 3D ED and structure determination by  electron diffraction tomography more powerful 

If you are exploring advanced microscopy for materials science or semiconductor applications, this overview will help you to understand the fundamentals and the latest analytical STEM capabilities.

What is Transmission Electron Microscopy (TEM)?  

Transmission Electron Microscopy is a technique where an electron beam passes through an ultra-thin specimen. The transmitted electrons carry information about the internal structure of the material.

Unlike Scanning Electron Microscopy, which mainly provides surface information, TEM allows imaging of the interior of a sample at nanometer and atomic resolution.

TEM uses a parallel electron beam and forms images from scattered and unscattered electrons by the objective lens that are  magnified by  several projection lenses.

What is Scanning Transmission Electron Microscopy ( STEM)? 

STEM is a mode of transmission electron microscopy where a highly focused, convergent electron probe is scanned point by point across the sample. At each pixel, signals are generated from the interaction of electrons with the sample and collected by various detectors.

These signals may include:

  • Transmitted electrons (bright field and dark field  STEM images)  
  • High-angle scattered electrons  (HAADF STEM images)
  • Characteristic X-rays for elemental analysis  (EDS)
  • Diffracted electrons (virtual STEM, 4D STEM, 3D ED)

This pixel-by-pixel signal collection makes STEM a powerful platform for imaging, compositional analysis, structural analysis, and advanced difraction techniques. 

What is the difference between SEM, TEM, and STEM?  

SEM detects scattered (BSE) and emitted (SE) elecrons from the surface of a specimen and is primarily used for surface imaging and characterization.

 TEM uses a parallel beam transmitted through a thin specimen to form high resolution, phase contrast images of internal structure. 

STEM also uses transmitted electrons, but scans a focused electron probe across the sample, enabling simultaneous imaging, elemental mapping, diffraction, and analytical measurements.

 

How is image contrast formed in TEM?

Contrast in TEM imaging is created mainly by two mechanisms:
 

1. Scattering contrast

Areas that scatter electrons strongly appear darker because more electrons are blocked by the objective aperture.

2. Phase contrast

Electron waves passing through the sample experience phase shifts depending on the material structure. These waves interfere and create high resolution lattice images.

The final image depends on factors such as spherical aberration, defocus, and contrast transfer function, which ultimately limit achievable resolution.


Why does acceleration voltage matter in TEM and STEM?

 Acceleration voltage mainly influences resolution and penetration depth. 

 Lower voltages:  

  • Increase scattering cross section (i.e. generated signal)
  • Provide stronger contrast of thin specimen  
  • Avoid knock-on damage (silicon, carbon)
  • Improve X-ray generation efficiency for EDX analysis   

 Higher voltages:  

  • Reduce imaging abberations
  • Improve achievable resolution    
  • Increase penetration depth in materials    
  • Requires larger TEM infrastructure

 

What is analytical STEM?  

Analytical STEM combines imaging at each scanned position with chemical and structural analysis. 

Key analytical techniques include:

  • EDX mapping for elemental composition
  • EELS for chemical and bonding information (poslední)
  • High angle annular dark field imaging for Z contrast
  • Diffraction based techniques for phase and orientation mapping (druhý)

This allows detailed characterization of alloys, nanoparticles, semiconductor devices, and complex multilayer architectures in additive manufacturing and functional materials.
 

What is STEM/EDX tomography?

STEM/EDX tomography enables three-dimensional characterisation of materials and their morphology.

In this technique, the sample is tilted across a defined angular range while images or analytical data are collected at each tilt step. Using 3D reconstruction algorithms, a 3D volume of the sample is generated. This allows for  segmentation of  the key features in the sample architecture. 

Applications include:

  • 3D architecture of semiconductor devices
  • Material´s morphology and segmentation
  • Elemental distribution in complex materials

What is 4D-STEM?

4D-STEM refers to scanning a 2D region of interest while recording 2D diffraction pattern at every pixel. This produces a four-dimensional dataset with two spatial dimensions and two diffraction dimensions.


4D-STEM enables:

  • Crystallinity and a amorphization
  • Phase identification
  • Grain size distribution
  • Crystallographic orientation mapping
  • Strain mapping at nanometer scale

This techniques significantly improves the spatial resolution compared to SEM-based diffraction techniques (EBSD, TKD).

What is beam precession and why it is important?

Beam precession tilts and rotates the electron beam during diffraction data acquisition, effectivelly minimizing the dynamical scattering effects.

This technique facilitates:

  • Improved signal to noise ratio
  • Enhanced diffraction spot clarity
  • Homogeneous intensity in diffraction spots
  • Improved accuracy of phase and orientation mapping
  • Precise and accurate strain measurements

Beam precession is especially critical for high quality 4D-STEM datasets, resulting in accurate and precise analytical results.

What is electron diffraction tomography?

Electron diffraction tomography collects diffraction patterns while tilting the sample (stepwise or continuously) across a defined angular range.

Combined with beam precession and dedicated refinement software, this technique allows for:

  • De novo crystal structure determination at sub-ångström resolution.
  • Absolute structure determination including molecule chirality.
  • Identification of hydrogens in the atomic structure models.
  • Structure determination from both sub-micron monocrystals and FIB-milled lamellas of polycrystalline materials.

This transforms electron diffraction tomography for atomic structure determination for otherwise challenging samples. Crystal twinning or too small crystals do not prevent atomic structure determination anymore. 

Why is analytical STEM critical for semiconductors and materials science?

Modern materials and semiconductor devices are becoming:

  • Smaller
  • More complex
  • Three dimensional

 Analytical STEM enables: 

  • Structural and compositional analysis at nanometer resolution
  • Nanoscale morphology and 3D architecture characterization 
  • Quantitative elemental analysis and mapping
  • Phase and crystallinity determination
  • Grain size and orientation mapping
  • Failure analysis at the nanoscale
  • Strain engineering validation
  • Electric field quantification

 All these capabilities are essential for the characterization of strucutral (critical dimensions) and physical properties of advanced nodes, functional materials, complex alloys, and nanoparticles.

Dr. Daniel Nemecek, Tescan STEM expert